Presentations

PUBLICATIONS

  1. Yasugi M, Kubota-Koketsu R, Yamashita A, Kawashita N, Du A, Sasaki T, Nishimura M, Misaki R, Kuhara M, Boonsathorn N, Fujiyama K, Okuno Y, Nakaya T, Ikuta K. Human Monoclonal Antibodies Broadly Neutralizing against Influenza B Virus PLoS Pathog. 2013 Feb;9(2):e1003150. link
  2. Inoue Y, Kubota-Koketsu R, Yamashita A, Nishimura M, Ideno S, Ono KI, Okuno Y, Ikuta K. Induction of Anti-Influenza Immunity by Modified GFP Carrying Hemagglutinin-derived Epitope Structure. J Biol Chem. 2013 Feb 15;288(7):4981-90. link
  3. Noda M, Masrinoul P, Punkum C, Pipattanaboon C, Ramasoota P, Setthapramote C, Sasaki T, Sasayama M, Yamashita A, Kurosu T, Ikuta K, Okabayashi T., 2012. Limited cross-reactivity of mouse monoclonal antibodies against Dengue virus capsid protein among four serotypes. Biologics. 6, 409-16. link
  4. Tsukui T, Eda S, Kaneko T, Sato S, Okazaki S, Kakizaki-Chiba K, Itakura M, Mitsui H, Yamashita A, Terasawa K, Minamisawa K. The Type III Secretion System of Bradyrhizobium japonicum USDA122 Mediates Symbiotic Incompatibility with Rj2 Soybean Plants. Appl Environ Microbiol. 2013 Feb;79(3):1048-51.
  5. Okubo T, Ikeda S, Yamashita A, Terasawa K, Minamisawa K. , 2012. Pyrosequence Read Length of 16S rRNA Gene Affects Phylogenetic Assignment of Plant-associated Bacteria. Microbes Environ 27(2), 204-8. link
  6. Okubo T, Tsukui T, Maita H, Okamoto S, Oshima K, Fujisawa T, Saito A, Futamata H, Hattori R, Shimomura Y, Haruta S, Morimoto S, Wang Y, Sakai Y, Hattori M, Aizawa SI, Nagashima KV, Masuda S, Hattori T, Yamashita A, Bao Z, Hayatsu M, Kajiya-Kanegae H, Yoshinaga I, Sakamoto K, Toyota K, Nakao M, Kohara M, Anda M, Niwa R, Jung-Hwan P, Sameshima-Saito R, Tokuda SI, Yamamoto S, Yamamoto S, Yokoyama T, Akutsu T, Nakamura Y, Nakahira-Yanaka Y, Takada Hoshino Y, Hirakawa H, Mitsui H, Terasawa K, Itakura M, Sato S, Ikeda-Ohtsubo W, Sakakura N, Kaminuma E, Minamisawa K. , 2012. Complete Genome Sequence of Bradyrhizobium sp. S23321: Insights into Symbiosis Evolution in Soil Oligotrophs. Microbes Environ. 2012;27(3):306-15. link
  7. Boonchawalit S, Jullaksorn D, Uttiyoung J, Yowang A, Krathong N, Chautrakul S, Yamashita A, Ikuta K, Roobsoong A, Kanitvittaya S, Sawanpanyalert P, Kameoka M., 2011. Molecular Evolution of HIV-1 CRF01_AE Env in Thai Patients. PLoS One 6(11), e27098. link
  8. Puiprom, O., Yamashita, A., Sasayama, M., Limkittikul, K., Boonha, K., Jittmitraphap, A., Leaungwutiwong, P., Kurosu, T., Ramasoota, P., Ikuta, K., 2011. Co-existence of major and minor viral populations from two different origins in patients secondarily infected with dengue virus serotype 2 in Bangkok. BBRC 413(1), 136-42. link
  9. Urayama, T., Sapsutthipas, S., Tsujikawa, M., Yamashita, A., Nishigaki, H., Ibrahim, MS., Hagiwara, K., Yunoki, M., Yasunaga, T., Yamaguchi, T. and Ikuta, K., 2010. Full-Length Sequences of One Genotype 4 and Three Genotype 3 Hepatitis E Viruses in Fecal Samples from Domestic Swine in Japan. The Open Veterinary Science Journal 4, 11-19. link
  10. Yamashita, A., Kawashita, N., Kubota-Koketsu, R., Inoue, Y., Watanabe, Y., Ibrahim, MS., Ideno, S., Yunoki, M., Okuno, Y., Takagi, T., Yasunaga, T., Ikuta, K., 2010. Highly conserved sequences for human neutralization epitope on hemagglutinin of influenza A viruses H3N2, H1N1 and H5N1: Implication for human monoclonal antibody recognition. BBRC 393(4), 614-618. link
  11. Nakamura, S., Yang, C-S., Sakon, N., Ueda, M., Tougan, T., Yamashita, A., Goto, N., Takahashi, K., Yasunaga, T., Ikuta, K., Mizutani, T., Okamoto, Y., Tagami, M., Morita, R., Maeda, N., Kawai, J., Hayashizaki, Y., Nagai, Y., Horii, T., Iida, T., Nakaya, T., 2009. Direct Metagenomic Detection of Viral Pathogens in Nasal and Fecal Specimens Using an Unbiased High-Throughput Sequencing Approach. PLoS ONE 4(1), e4219. link
  12. Yamashita, A., Goto, N., Nishiguchi, S., Shimada, K., Yamanishi, H., Yasunaga, T., 2008. Computational search for over-represented 8-mers within the 5′-regulatory regions of 634 mouse testis-specific genes. Gene 427, 93-98. link
  13. Yoshida, M., Yamashita, A., Idoji, Y., Nishiguchi, S., Shimada, K., Yasunaga, T., Yamanishi, H., 2008. In silico study of a novel gene evolved from an ancestral SVIP gene and highly expressed in the adult mouse testes. Int. J. Mol. Med. 22(2), 143-148. link
  14. Idoji, Y., Watanabe, Y., Yamashita, A., Yamanishi, K., Nishiguchi, S., Shimada, K., Yasunaga, T., Yamanishi, H., 2008. In silico study of whey-acidic-protein domain containing oral protease inhibitors. Int. J. Mol. Med. 21, 461-468. link
  15. Kashiwada, R., Yamashita, A., Goto, N., Shota, N., Yasunaga, T., 2007. Analysis of HERV-K replication mechanism in the human genome. The proceedings of the 2007 annual conference of the Japanese society for bioinformatics P061.
  16. Shibasaki, T., Yamashita, A., Goto, N., Shota, N., Yasunaga, T., 2007. Conservation of Nested genes in Eukaryote. The proceedings of the 2007 annual conference of the Japanese society for bioinformatics P062.
  17. Yamashita, A., Kurokawa, K., Yasunaga, T., 2003. Mapping Database of cDNA and Genome Designed to Use for Various Applications. Genome Informatics 14, 418-419. link