Multiple sequence alignment

Input align format data
See sample 1 (nucleotide), sample 2 (amino)

maxiterate: retree:
Alignment strategy localpair genafpair globalpair
Output Format ClutralW Fasta
Output Order input order aligned order
Opening Penarties
Gap opening penalty: default: 1.53
Offset: (works like gap extension penalty) default: 0.123

clear all

Newick tree

clustalw result

Need more precise alignment? Try Gene Align.
See sample 1 (nucleotide), sample 2 (amino)

go to BLAST Matrix go to Align to fasta Matrix