Convert align to multifasta
Input align format data
0-Homo ------------------------------------------------------------ 1-Homo ----------------MNWFGSNFFRCPED------------------------------ 2-Homo ------------------------------------------------------------ 3-Homo ------------------------------------------------------------ 4-Pongo ------------------------------------------------------------ 5-Canis MAVAKVHLAIL--KPIKDWFSDNIGCSQGSVYEGLQRAPLPASAAQNGRGQERL------ 6-Rattus ----MTHLTGLGDRGFKGMIPCRFYKASRG------EGPSSRRHRDTVRDERDF-----D 7-Rattus ------------------------------------------------------------ 8-Mus ----------------MSWMGHHFSRWCKD------------------------------ 9-Mus_musculus_g ------------------------------------------------------------ 10-Mus ------------------------------------------------------------ 11-Mus ------------------------------------------------------------ 12-Gallus ------------------------------------------------------------ 13-Gallus ------------------------------------------------------------ 15-Bos ------------------------------------------------------------ 27-Pan ---MAGNPSVVRGSIRPAWLPGHLCQSPAQ------GCVAAHISGSGLRGRSQCPCLHTS 28-Pan ----------------MNWFGSNFFRCPED------------------------------ 29-Xenopus ------------------------------------------------------------ 30-Xenopus ------------------------------------------------------------ 31-Xenopus ------------------------------------------------------------ 35-Dictyostelium ------------------------------------------------------------ 37-Schistosoma ------------------------------------------------------------ 62-Oryza_sativa_ ------------------------------------------------------------ 0-Homo ------------------------------------------------------------ 1-Homo -----LSLLNIYSP------------------------LL-------------------- 2-Homo ------------------------------------------------------------ 3-Homo ------------------------------------------------------------ 4-Pongo ------------------------------------------------------------ 5-Canis -GPPGYHCGFAFAPFNRGGASFRKPVTDQNLVERVRNGLLPTALRPCAAGSQ------KD 6-Rattus EAIPLMRVASERDPVKCGRNQGKGPTT-----ERNENGFLGVKGQQAAPDRNHLAVFGHD 7-Rattus ------------------------------------------------------------ 8-Mus -----ISVLSSHLP------------------------LF-------------------- 9-Mus_musculus_g ------------------------------------------------------------ 10-Mus ------------------------------------------------------------ 11-Mus ------------------------------------------------------------ 12-Gallus ------------------------------------------------------------ 13-Gallus ------------------------------------------------------------ 15-Bos ------------------------------------------------------------ 27-Pan ASITAIAILQLPSP-ESPAPSAPVPCPHLPSIQRPLDRLCHCRRSHFCRPQRHLL---RA 28-Pan -----LSLLNIYSP------------------------LL-------------------- 29-Xenopus ------------------------------------------------------------ 30-Xenopus ------------------------------------------------------------ 31-Xenopus ------------------------------------------------------------ 35-Dictyostelium ------------------------------------------------------------ 37-Schistosoma ------------------------------------------------------------ 62-Oryza_sativa_ ------------------------------------------------------------ 0-Homo ----------------------------MSYPV--------------------------- 1-Homo SHMSSED------EHFISNL-------RGHVPAS-------------------------- 2-Homo --MQ------------------------AQAPV--------------------------- 3-Homo --MQ------------------------AQAPV--------------------------- 4-Pongo --MQ------------------------AQAPV--------------------------- 5-Canis GIGQSRA------HFLPRGLDTGRNCPLGSAPLS----LCWGVPCRPHSAHTDR-QTRSR 6-Rattus DRMNDPQTTIKFPSLLLSVV-------VNSTPTTPSTKLITSLPSLRISPFVGRLNPRPQ 7-Rattus --MQFEM------HDHVKGK-------AMSYPV--------------------------- 8-Mus SPMPSED------EHLISNL-------RSHVPAR-------------------------- 9-Mus_musculus_g --MQFEM------HDHVKGK-------AMSYPV--------------------------- 10-Mus ----------------------------MSYPV--------------------------- 11-Mus ---------------------------MAQAPT--------------------------- 12-Gallus ----------------------------MAVPT--------------------------- 13-Gallus ----------------------------MASRH--------------------------- 15-Bos ----------------------------MSYPV--------------------------- 27-Pan SKMQFEM------HDNVKGK-------AMSYPV--------------------------- 28-Pan SPISSED------EHFISNL-------RGHVPAS-------------------------- 29-Xenopus ----------------------------MSYPI--------------------------- 30-Xenopus ----------------------------MSYPV--------------------------- 31-Xenopus ----------------------------MSYPI--------------------------- 35-Dictyostelium ------------------------------------------------------------ 37-Schistosoma ----------------------------MESPT--------------------------- 62-Oryza_sativa_ ------------------------------------------------------------ 0-Homo ---------------------------TSQPQCATT--------SCYQTQLSDWHTGLTD 1-Homo -------------------------AVVKQPVRGAS---GRTTITAIVQTGGGWSTGLFS 2-Homo -------------------------VVVTQPGVGPG----------PAPQNSNWQTGMCD 3-Homo -------------------------VVVTQPGVGPG----------PAPQNSNWQTGMCD 4-Pongo -------------------------VVVTQPGVGPG----------PAPQNSNWQTGMCD 5-Canis AAEGQHLTPRSVDQVITARSGLAVTALHREPGAMPRETEGHGGKDLKEESIQTWEDNSPG 6-Rattus DPSCPNLLNYLVFGDLELKMAQAATVIVTQPGFV------------RAPQNSNWQTSLCD 7-Rattus ---------------------------TSQPQCTNT---------CYQTQLSDWHTGLTD 8-Mus -------------------------VVVKQPIRGAI---GRTTVAAIVQTGGDWSTGLFS 9-Mus_musculus_g ---------------------------TSQPQCANT---------CYQTQLSDWHTGLTD 10-Mus ---------------------------TSQPQCANT---------CYQTQLSDWHTGLTD 11-Mus -------------------------VIVTQPGFV------------RAPQNSNWQTSLCD 12-Gallus -------------------------VVTLQPQAVAV----------VTNAKPMWQTGLMD 13-Gallus -------------------------VVTVQPGFS------------VSPQSSTWHTGLLD 15-Bos ---------------------------TSQPQSAST---------CYQTQLSDWHTGLTD 27-Pan ---------------------------TSQPQCATT--------SCYQTQLSDWHTGLTD 28-Pan -------------------------AVVKQPVRGAS---GRTTITAIVQTGGGWSTGLFS 29-Xenopus ---------------------------GAQPQGVQG---------YVTSNSSQWNSDVFD 30-Xenopus ---------------------------SAQPQGVQG---------YMSSNSSQWNSDVFD 31-Xenopus ---------------------------SAQPQGVQG---------YMTSNSSQWNSDVFD 35-Dictyostelium --------------------------------------------------MSNWEHGLCD 37-Schistosoma ---------------------------TKQP---------------YAVRQRDWHDGLFD 62-Oryza_sativa_ -----------------------------------------------------WAGGLLD 0-Homo CCNDMPVCL------------------------CGTFAPLC------------------- 1-Homo VCRDRRICF------------------------CGLFCPMC------------------- 2-Homo CFSDCGVCL------------------------CGTFCFPC------------------- 3-Homo CFSDCGVCL------------------------CGTFCFPC------------------- 4-Pongo CFSDCGVCL------------------------CGTFCFPC------------------- 5-Canis HVNSEQKCSQHEEEGRQWEDRPGPSQSYSPNPPVGIYFLTTTAIEDPALKMQAQSPVVIV 6-Rattus CFSDCGVCL------------------------CGTFCFTC------------------- 7-Rattus CCNDMPVCL------------------------CGTFAPLC------------------- 8-Mus VCRDRKICF------------------------WGLLCPMC------------------- 9-Mus_musculus_g CCNDMPVCL------------------------CGTFAPLC------------------- 10-Mus CCNDMPVCL------------------------CGTFAPLC------------------- 11-Mus CFSDCGVCL------------------------CGTFCFTC------------------- 12-Gallus CCTDWSVCC------------------------CGLFCFPC------------------- 13-Gallus CMSDCSVCI------------------------CGAFCYPC------------------- 15-Bos CCNDMPVCL------------------------CGTFAPLC------------------- 27-Pan CCNDMPVCL------------------------CGTFAPLC------------------- 28-Pan VCRDRRICF------------------------CGLFCPMC------------------- 29-Xenopus CCEDMGICL------------------------CGTFVPCI------------------- 30-Xenopus CCEDMGTCL------------------------CGTFVPCI------------------- 31-Xenopus CCEDMGVCL------------------------CGTFVPCI------------------- 35-Dictyostelium CTSDIRVCC------------------------ISYLWPQLQI----------------- 37-Schistosoma CTNDCASCW------------------------LIFCCYPC------------------- 62-Oryza_sativa_ CGEDPAACC------------------------LSSLCTFCVF----GWNME-------- 0-Homo ----------------LAC-----------------RISDDFGECCCAP----------- 1-Homo ----------------LEC-----------------DIARHYGECLCWP----------- 2-Homo ----------------LGC-----------------QVAADMNECC-------------- 3-Homo ----------------LGC-----------------QVAADMNECC-------------- 4-Pongo ----------------LGC-----------------QVAADMNECC-------------- 5-Canis TQPGCGPMPQTSNWQTGMC-----------------DCFSDCGVCLCGTFCFMCLACQIA 6-Rattus ----------------LGC-----------------QVAADMNECC-------------- 7-Rattus ----------------LAC-----------------RISDDFGECCCAP----------- 8-Mus ----------------LEC-----------------DIARHYGECLCWP----------- 9-Mus_musculus_g ----------------LAC-----------------RISDDFGECCCAP----------- 10-Mus ----------------LAC-----------------RISDDFGECCCAP----------- 11-Mus ----------------LGC-----------------QVAADMNECC-------------- 12-Gallus ----------------LAC-----------------TVAGDMNECC-------------- 13-Gallus ----------------LGC-----------------QVANAMDEFC-------------- 15-Bos ----------------LAC-----------------RISDDFGECCCTP----------- 27-Pan ----------------LAC-----------------RISDDFGECCCAP----------- 28-Pan ----------------LEC-----------------DIARHYGECLCWP----------- 29-Xenopus ----------------LAC-----------------KVSQDFGECCCLP----------- 30-Xenopus ----------------LAC-----------------KVSKDYGECCCLP----------- 31-Xenopus ----------------LAC-----------------KVSQDFGECCCLP----------- 35-Dictyostelium -------MQQRATVEGRQC-----------------EITDCIFTALCFP----------- 37-Schistosoma ----------------YMC-----------------YMYRRYDECWATP----------- 62-Oryza_sativa_ -RLGFGNMYVHTAMFLLLCVAPFWVFNITALHIHDYDLSDAVGAAGIAL----------- 0-Homo ------Y-LPGGLHS--IRTGMRERYHIQGS-------VGHDWAALTFCLPCALCQMARE 1-Homo ------L-LPGSTFA--LRIGTRERHKIQGT-------LCEDWLAVHCCWAFSICQVARE 2-Homo --------LCGTGVA--MRTLYRTRYGIPGS-------ICDDYMATLCCPHCTLCQIKPS 3-Homo --------LCGTSVA--MRTLYRTRYGIPGS-------ICDDYMATLCCPHCTLCQIKRD 4-Pongo --------LCGTSVA--MRTLYRTRYGIPGS-------ICDDYMATFCCPHCTLCQIKRD 5-Canis ADMNECC-LCGTSVA--MRTLYRTRYGIPGS-------ICDDYLVTLCCPYCSLCQIKRD 6-Rattus --------LCGTTVA--MRTLYRTRYGIPGS-------ICDDYMVTLFCPVCSVCQIKRD 7-Rattus ------Y-LPGGLHS--LRTGMRERYHIQGS-------VGHDWAALTFCLPCALCQMARE 8-Mus ------L-LPGSTFA--LRIGTRERHRIQGT-------LCEDCVVVHCCWPFSICQVARE 9-Mus_musculus_g ------Y-LPGGLHS--LRTGMRERYHIQGS-------VGHDWAALTFCLPCALCQMARE 10-Mus ------Y-LPGGLHS--LRTGMRERYHIQGS-------VGHDWAALTFCLPCALCQMARE 11-Mus --------LCGTTVA--MRTLYRTRYGIPGS-------ICDDYMVTLFCPVCSVCQLKRD 12-Gallus --------LCGTSVA--MRTMYRTRYNIPGS-------ICSDFCITSCCPVCSVCQIKRD 13-Gallus --------LCGGSVA--MRTLYRTRYNIPGS-------ILGDYYSVMCCPMCALCQLKRD 15-Bos ------Y-LPGGLHS--LRTGMRERYRIQGS-------IGKDWAALTFCLPCALCQMARE 27-Pan ------Y-LPGGLHS--IRTGMRERYHIQGS-------VGHDWAALTFCLPCALCQMARE 28-Pan ------L-LPGSTFA--LRIGTRERHKIQGT-------LCEDWLAVHCCWPFSICQVARE 29-Xenopus ------C-LFGSVLA--VRTGIRERYHIEGS-------ICNDWVCLSFCGQCTLCQMARE 30-Xenopus ------C-LFGSVLA--VRTGIRERYHIEGS-------ICNDWVCLSFCAPCTLCQMARE 31-Xenopus ------C-LFGSILA--VRTGIRERYHIEGS-------ICKDWVCLSFCGPCALCQMARE 35-Dictyostelium ------C-V---TCL--TRSQIREKHGIEGS-------GVMDCLTVCYCTLCTIHQQIMQ 37-Schistosoma ------CLILFPGLT--LRAYHRAKHNIHGT-------LCKDWLKDYCCPLCSACQLDRD 62-Oryza_sativa_ ------C-FLGLLYGGFWRVQMRKRFALPGSRWCCGSASLTDYARWLFCWPCALAQEVR- 0-Homo LKIRE------------------- 1-Homo LKMRTSQVYEICAVPMTKDTLV-- 2-Homo DYRRRAM-----------RTF--- 3-Homo INRRRAM-----------RTF--- 4-Pongo INRRRAM-----------RTF--- 5-Canis INRRRAM-----------RTF--- 6-Rattus INRRRAM-----------NAF--- 7-Rattus LKIRE------------------- 8-Mus LKMRTSQLYEICEVPELKNTLV-- 9-Mus_musculus_g LKIRE------------------- 10-Mus LKIRE------------------- 11-Mus INRRRAM-----------NAF--- 12-Gallus INRRRAM-----------GIF--- 13-Gallus IDYRREQ-----------RTF--- 15-Bos LKIRE------------------- 27-Pan LKIRE------------------- 28-Pan LKMRTSQVYEIYAVPMTKDTLV-- 29-Xenopus LKARN------------------- 30-Xenopus LKARN------------------- 31-Xenopus LKTRN------------------- 35-Dictyostelium LQGKGEK---------PSGLFMN- 37-Schistosoma MKYVEAT-----------SGILNV 62-Oryza_sativa_ ------------------------
clear all
delete 'deletions', words per line:
See sample
go to BLAST Matrix
go to alignment