extractCD
(search and extract partial sequence of Conserved Domain)
ver. 2008Dec08

Input query protein sequence in fasta format
Sequence: protein nucleotide
E-value
Cover Ratio%
Report related sequence up to sequences
Clear all See sample to Japanese page

CDsearch performs RPS-BLAST search against NCBI CDD database. Subsequences of the top hit region for each of the input sequence will be extracted.
* RPS-BLAST: ftp://ftp.ncbi.nih.gov/blast/documents/rpsblast.html , see also http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml